The Cattle (Bos taurus) BodyMap Transcriptome database (CBT Database) is an interactive web-based platform and set of analytic tools for effcient retrieve and analysis of gene expression, long noncoding RNA, RNA editing, alternative splicing among 52 tissues based on three developtmental stage.
CBT database contains:
3
Growth stages
13
Tissue categories
52
Tissue types
25,530
Expressed genes
3,093,058
RNA editing events
215,754
Splicing events
28,533
Novel lncRNA genes
144,363
LncRNA transcripts
Search modules:
We present four modules to retrieve and download the transcriptome dataset. Within each module, the user can select gene name, genomic location or Ensemble gene id to retrieve and analyze the gene expression, lncRNA, RNA editing and splicing information.
Gene expression
This module provides a search box to retrieve gene expression based on gene name or Ensembl ID, then it will generate boxplot of the submited gene based your defined tissues and stages. Downloading figures and tables is free.
Novel lncRNA
This module provides a search box to retrieve lncRNA annotation, expression based on genomic location, lncRNA gene id, or lncRNA transcript ID. It will generate gene structure and expression boxplot of lncRNA gene and transcript with defined tissues and stages. Downloading figures and tables is free.
RNA editing
This module provides RNA editing information based on genomic location, gene name, or Ensembl ID. The information contains locations, clusters, repeats, expressed tissued and stages. Download is free.
Alternative splicing
This module provides splicing information based on gene name, or Ensembl ID. The information contains genomic location and annotation of five splicing types. Download is free.
More about the CBT Database
Please read manuscript A Cattle BodyMap of Transcriptome across Tissues and Developmental Stages Deciphers Genetic Architecture of Production Traits in Beef Cattle by Cai et al. 2024